PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_25229
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 723aa    MW: 79770.2 Da    PI: 6.4758
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_25229genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06452471626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C+ f+r+G C+ Gd CkF+H+
  PEQU_25229 452 CN-FYRMGRCQQGDLCKFSHD 471
                 66.6677*************7 PP

2zf-CCCH21.34.7e-075325461125
                 GTS--TTTTT-SS-S CS
     zf-CCCH  11 rtGtCkyGdrCkFaH 25 
                 r+G C++GdrCkF+H
  PEQU_25229 532 RSGSCNRGDRCKFSH 546
                 89************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.554446473IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6447471IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-4447472IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-4450471IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.441521549IPR000571Zinc finger, CCCH-type
SMARTSM003561.8523548IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MSTSASTSTL IGAISSTLSH CDMESVLRRI GNDLETLYSP TGQCSSFSSY IPRRIHLDSS  60
SHRSLVRILS CCVNNSLFSL STEPGRTLSV KNPFSIQVRG QLHQVQEAGG TSDGRTSAES  120
QEGDHNADCG VQGASVDGDM LFGLDLSDCD EKEIEARVNS EELHSIMFEC GRLIDAPNEE  180
HSAESREGSG QTVPVDIAHN QLEIAEALVN GADERVSHLG EVLEVARVDR RVYDFLNDAE  240
TTRNVAVDVG NQISSEEGTG YDRAILVETQ DENFKGAEEE EGEDEKQQPG VCSTPIVVYS  300
GLKNFKYDQL RNLDHPIDGA EVEEGEISDE VQDLEELVDI NDKVPDGQRK EGDDFSNIAS  360
TSSCIHKIEV PEFGASPLDR SEENLIVKAT QMKRKVVEAK EKKNKKNSTL TEERKAKKKI  420
AKKRKRAQKN REQGVKKLKL HAIVKPKEVK YCNFYRMGRC QQGDLCKFSH DLIPLTKSMA  480
SSLISFMMLR LDFSRESKRG RGSELVGKGK GIFCSINHRS QRRDRLTFRA ERSGSCNRGD  540
RCKFSHKLTD SKIDSLLTLE QQKFKNQLVN SHASPLGIGP FESKTIETVP LRNKPLTDAN  600
RVPKGIRFIS FGTVQTDLTN KVEKNLPVNK SCHTGAYNNH QKQDDLLARQ HKSALNLLWN  660
SLPPENSVMS GGLVAHVSSN DFAVKDSGNA TKGSPAAHPG GTANDKVSEA AKILDEFLFC  720
GAD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1420426AKKRKRA
2422438KRKRAQKNREQGVKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743